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Ligand · XYM

XYM · (2Z)-3-[(carboxymethyl)sulfanyl]-2-hydroxyprop-2-enoic acid

XYM, (2Z)-3-[(carboxymethyl)sulfanyl]-2-hydroxyprop-2-enoic acid (C5 H6 O5 S, 178.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
XYM
Formula
C5 H6 O5 S
Class
ligand
Structures
1
PDB entries
1

Binding sites

XYM in 1 structure; the first of them:

  • 3ASJ · Crystal structure of homoisocitrate dehydrogenase in complex with a designed inhibitor · XYM B1000 · binds LYS171, VAL174, ASP204, ARG85, ARG88, ARG98, ARG118, TYR125 and 3 more
  • 3ASJ · Crystal structure of homoisocitrate dehydrogenase in complex with a designed inhibitor · XYM B1000 · binds LYS171, VAL174, ASP204, ARG85, ARG88, ARG98, ARG118, TYR125 and 3 more

Residues it binds most

ARG 4, ASP 4, VAL 4, LYS 4, TYR 4 (residue and the binding sites it lines).

Found with

  • XYN · 3-[(carboxymethyl)sulfanyl]-2-oxopropanoic acid
  • MPD · (4S)-2-methyl-2,4-pentanediol

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