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Ligand · XR2

XR2 · 1-methyl-9-[12-(9-methylphenazin-10-ium-1-yl)-12-oxo-2,11-diaza-5,8-diazoniadodec-1-anoyl]phenazin-10-ium

XR2, 1-methyl-9-[12-(9-methylphenazin-10-ium-1-yl)-12-oxo-2,11-diaza-5,8-diazoniadodec-1-anoyl]phenazin-10-ium (C34 H38 N8 O2 +4, 590.7 g/mol), in the MolNFT structures on GenesisL1: bound in 10 records (5 PDB entries). Every binding site…

Component
XR2
Formula
C34 H38 N8 O2 +4
Class
ligand
Structures
10
PDB entries
5

Binding sites

XR2 in 10 structures; the first of them:

  • 1X95 · Solution structure of the DNA-hexamer ATGCAT complexed with DNA Bis-intercalating… · XR2 A21 · binds DT2, DG3, DC4, DA5, DT12, DG13, DC14, DA15
  • 2MG8 · Solution structure of TFF1 Estrogen Response Element complexed with DNA Bis-intercalating… · XR2 B101 · binds DG9, DT10, DG11, DG12, DC19, DC20, DA21, DC22
  • 4BZT · The Solution Structure of the MLN 944-d(ATGCAT)2 Complex · XR2 A13 · binds DT2, DG3, DC4, DA5, DT8, DG9, DC10, DA11
  • 4BZU · The Solution Structure of the MLN 944-d(TATGCATA)2 Complex · XR2 A17 · binds DT3, DG4, DC5, DA6, DT11, DG12, DC13, DA14
  • 4BZV · The Solution Structure of the MLN 944-d(TACGCGTA)2 complex · XR2 A17 · binds DC3, DG4, DC5, DG6, DC11, DG12, DC13, DG14
  • 1X95 · Solution structure of the DNA-hexamer atgcat complexed with DNA bis- intercalating… · XR2 A21 · binds DT2, DG3, DC4, DA5, DT12, DG13, DC14, DA15
  • 2MG8 · Solution structure of TFF1 estrogen response element complexed with DNA bis-intercalating… · XR2 B101 · binds DG9, DT10, DG11, DG12, DC19, DC20, DA21, DC22
  • 4BZT · The solution structure of the mln 944-D(ATGCAT)2 complex · XR2 A13 · binds DT2, DG3, DC4, DA5, DT8, DG9, DC10, DA11
  • 4BZU · The solution structure of the mln 944-D(TATGCATA)2 complex · XR2 A17 · binds DT3, DG4, DC5, DA6, DT11, DG12, DC13, DA14
  • 4BZV · The solution structure of the mln 944-D(TACGCGTA)2 complex · XR2 A17 · binds DC3, DG4, DC5, DG6, DC11, DG12, DC13, DG14

Residues it binds most

DC 12, DG 12, DA 10, DT 10 (residue and the binding sites it lines).

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