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Ligand · XQD

XQD · [(2~{R},3~{R},4~{S},5~{S},6~{R})-3-acetamido-5-[[(1~{S})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-1-oxidanyl-ethyl]amino]-6-methyl-4-oxidanyl-oxan-2-yl] [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate

XQD, [(2~{R},3~{R},4~{S},5~{S},6~{R})-3-acetamido-5-[[(1~{S})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl…

Component
XQD
Formula
C40 H66 N11 O32 P5 S
Class
ligand
Structures
1
PDB entries
1

Binding sites

XQD in 1 structure; the first of them:

  • 7L82 · x-ray structure of the psychrobacter cryohalolentis Pcryo_0637 N-acetyltransferase in the… · XQD AAA301 · binds TYR8, GLY9, ALA10, SER11, GLY12, CYS13, GLY14, ILE39 and 20 more

Residues it binds most

GLY 1, ILE 1, ALA 1, ASP 1, TYR 1, ASN 1, CYS 1, LEU 1, MET 1, PRO 1 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • MPD · (4S)-2-methyl-2,4-pentanediol

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