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Ligand · XIF

XIF · Piperidine-3,4-diol

XIF, Piperidine-3,4-diol (C5 H11 N O2, 117.2 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
XIF
Formula
C5 H11 N O2
Class
ligand
Structures
6
PDB entries
3

Binding sites

XIF in 6 structures; the first of them:

  • 1FH8 · Crystal structure of the xylanase cex with xylobiose-derived isofagomine inhibitor · XIF A602 · binds GLU43, LYS47, HIS80, TRP84, ASN126, GLU127, GLN203, HIS205 and 3 more
  • 1V0L · Xylanase Xyn10A from Streptomyces lividans in complex with xylobio-isofagomine at pH 5.8 · XIF A1304 · binds GLU44, LYS48, HIS81, TRP85, ASN127, GLU128, GLN205, HIS207 and 3 more
  • 1V0N · Xylanase Xyn10a from Streptomyces lividans in complex with xylobio-isofagomine at pH 7.5 · XIF A1305 · binds GLU44, LYS48, HIS81, TRP85, ASN127, GLU128, GLN205, HIS207 and 3 more
  • 1FH8 · Crystal structure of the xylanase cex with xylobiose-derived isofagomine inhibitor · XIF A602 · binds GLU43, LYS47, HIS80, TRP84, ASN126, GLU127, GLN203, HIS205 and 3 more
  • 1V0L · Xylanase XYN10A from streptomyces lividans in complex with xylobio- isofagomine at pH 5.8 · XIF A1304 · binds GLU44, LYS48, HIS81, TRP85, ASN127, GLU128, GLN205, HIS207 and 3 more
  • 1V0N · Xylanase XYN10A from streptomyces lividans in complex with xylobio- isofagomine at pH 7.5 · XIF A1305 · binds GLU44, LYS48, HIS81, TRP85, ASN127, GLU128, GLN205, HIS207 and 3 more

Residues it binds most

GLU 6, TRP 6, HIS 6, ASN 6, GLN 6, LYS 6 (residue and the binding sites it lines).

Found with

  • XYP · beta-D-xylopyranose
  • EDO · 1,2-ethanediol
  • IMD · Imidazole

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