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Ligand · XDS

XDS · (5S)-5-(dioxidanyl)-9-methyl-7H-purine-2,6,8-trione

XDS, (5S)-5-(dioxidanyl)-9-methyl-7H-purine-2,6,8-trione (C6 H6 N4 O5, 214.1 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
XDS
Formula
C6 H6 N4 O5
Class
ligand
Structures
7
PDB entries
4

Binding sites

XDS in 7 structures; the first of them:

  • 4CW2 · Crystal structure of cofactor-free urate oxidase in complex with the 5-peroxo derivative… · XDS A1303 · binds PHE159, LEU170, ARG176, SER226, VAL227, GLN228, ASN254, HIS256 and 2 more
  • 4CW3 · Crystal structure of cofactor-free urate oxidase in complex with the 5-peroxo derivative… · XDS A1302 · binds PHE159, LEU170, ARG176, SER226, VAL227, GLN228, ASN254, HIS256 and 2 more
  • 4CW6 · Crystal structure of cofactor-free urate oxidase in complex with the 5-peroxo derivative… · XDS A1302 · binds PHE159, LEU170, ARG176, SER226, VAL227, GLN228, ASN254, HIS256 and 2 more
  • 7QAR · Serial crystallography structure of cofactor-free urate oxidase in complex with the… · XDS AAA401 · binds PHE159, LEU170, ARG176, SER226, VAL227, GLN228, ASN254, HIS256 and 2 more
  • 4CW2 · Crystal structure of cofactor-free urate oxidase in complex with the 5-peroxo derivative… · XDS A1303 · binds PHE159, LEU170, ARG176, SER226, VAL227, GLN228, ASN254, HIS256 and 2 more
  • 4CW3 · Crystal structure of cofactor-free urate oxidase in complex with the 5-peroxo derivative… · XDS A1302 · binds PHE159, LEU170, ARG176, SER226, VAL227, GLN228, ASN254, HIS256 and 2 more
  • 4CW6 · Crystal structure of cofactor-free urate oxidase in complex with the 5-peroxo derivative… · XDS A1302 · binds PHE159, LEU170, ARG176, SER226, VAL227, GLN228, ASN254, HIS256 and 2 more

Residues it binds most

ARG 7, ASN 7, GLN 7, GLY 7, HIS 7, ILE 7, LEU 7, PHE 7, SER 7, VAL 7 (residue and the binding sites it lines).

Found with

  • MPD · (4S)-2-methyl-2,4-pentanediol
  • MUA · 9-methyl uric acid
  • OXY · Oxygen molecule

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