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Ligand · XDP

XDP · D-xylulose-2,2-diol-1,5-bisphosphate

XDP, D-xylulose-2,2-diol-1,5-bisphosphate (C5 H14 O12 P2, 328.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
XDP
Formula
C5 H14 O12 P2
Class
sugar
Structures
2
PDB entries
1

Binding sites

XDP in 2 structures; the first of them:

  • 1RCO · Spinach rubisco in complex with the inhibitor D-xylulose-2,2-diol-1,5-bisphosphate · XDP L476 · binds LYS175, LYS177, ASP203, GLU204, HIS294, ARG295, HIS298, HIS327 and 14 more
  • 1RCO · Spinach rubisco in complex with the inhibitor D-xylulose-2, 2-diol-1,5-bisphosphate · XDP L476 · binds LYS175, LYS177, ASP203, GLU204, HIS294, ARG295, HIS298, HIS327 and 14 more

Residues it binds most

GLY 16, HIS 16, LYS 16, GLU 16, ARG 16, ASN 16, ASP 16, GLN 16, LEU 16, PHE 16 (residue and the binding sites it lines).

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