Ligand · XDN
XDN · Piperidine-3,4,5-triol
XDN, Piperidine-3,4,5-triol (C5 H11 N O3, 133.2 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- XDN
- Formula
- C5 H11 N O3
- Class
- ligand
- Structures
- 6
- PDB entries
- 3
Binding sites
XDN in 6 structures; the first of them:
- 1FH7 · Crystal structure of the xylanase cex with xylobiose-derived inhibitor deoxynojirimycin · XDN A602 · binds GLU43, LYS47, HIS80, TRP84, ASN126, GLU127, ASN169, GLN203 and 4 more
- 1V0K · Xylanase Xyn10A from Streptomyces lividans in complex with xylobio-deoxynojirimycin at pH… · XDN A1304 · binds GLU44, LYS48, HIS81, TRP85, ASN127, GLU128, ASN170, GLN205 and 4 more
- 1V0M · Xylanase Xyn10a from Streptomyces lividans in complex with xylobio-deoxynojirimycin at pH… · XDN A1303 · binds GLU44, LYS48, HIS81, TRP85, ASN127, GLU128, ASN170, GLN205 and 4 more
- 1FH7 · Crystal structure of the xylanase cex with xylobiose-derived inhibitor deoxynojirimycin · XDN A602 · binds GLU43, LYS47, HIS80, TRP84, ASN126, GLU127, ASN169, GLN203 and 4 more
- 1V0K · Xylanase XYN10A from streptomyces lividans in complex with xylobio- deoxynojirimycin at… · XDN A1304 · binds GLU44, LYS48, HIS81, TRP85, ASN127, GLU128, ASN170, GLN205 and 4 more
- 1V0M · Xylanase XYN10A from streptomyces lividans in complex with xylobio- deoxynojirimycin at… · XDN A1303 · binds GLU44, LYS48, HIS81, TRP85, ASN127, GLU128, ASN170, GLN205 and 4 more
Residues it binds most
GLU 6, TRP 6, ASN 6, HIS 6, GLN 6, LYS 6 (residue and the binding sites it lines).
Found with
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