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Ligand · XDL

XDL · Xylose-derived isofagomine lactam

XDL, Xylose-derived isofagomine lactam (C5 H9 N O2, 115.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
XDL
Formula
C5 H9 N O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

XDL in 2 structures; the first of them:

  • 1OD8 · Xylanase Xyn10A from Streptomyces lividans in complex with xylobio-isofagomine lactam · XDL A1306 · binds ASP132, GLY133, ASN173, TRP179, GLY211, SER212
  • 1OD8 · Xylanase XYN10A from streptomyces lividans in complex with xylobio- isofagomine lactam · XDL A1306 · binds ASP132, GLY133, ASN173, TRP179, GLY211, SER212

Residues it binds most

TRP 4, ASN 4, GLU 2, GLY 2, HIS 2, ASP 2, GLN 2, LYS 2, SER 2 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • XYP · beta-D-xylopyranose
  • IMD · Imidazole

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