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Ligand · XDK

XDK · 2-amino-4-pyridyl-pyrimidine

XDK, 2-amino-4-pyridyl-pyrimidine (C9 H8 N4, 172.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
XDK
Formula
C9 H8 N4
Class
ligand
Structures
4
PDB entries
2

Binding sites

XDK in 4 structures; the first of them:

  • 2XDK · Structure of HSP90 with small molecule inhibitor bound · XDK A1226 · binds ASN51, SER52, ALA55, ASP93, GLY97, MET98, ASN106, LEU107 and 2 more
  • 7SF4 · M. tb EgtD in complex with imatinib · XDK A401 · binds TYR39, PHE47, ILE50, TYR56, GLY161, SER162, THR163, ASN166 and 6 more
  • 2XDK · Structure of HSP90 with small molecule inhibitor bound · XDK A1226 · binds ASN51, SER52, ALA55, ASP93, GLY97, MET98, ASN106, LEU107 and 2 more
  • 7SF4 · M. tb egtd in complex with imatinib · XDK A401 · binds ILE50, TYR56, GLY161, SER162, THR163, ASN166, TYR206, THR213 and 4 more

Residues it binds most

SER 6, TYR 4, THR 6, ASN 6, PHE 6, GLY 6, MET 6, GLU 4, ILE 4, ALA 2 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • GOL · Glycerol

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