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Ligand · XBP

XBP · Xylulose-1,5-bisphosphate

XBP, Xylulose-1,5-bisphosphate (C5 H12 O11 P2, 310.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
XBP
Formula
C5 H12 O11 P2
Class
sugar
Structures
6
PDB entries
3

Binding sites

XBP in 6 structures; the first of them:

  • 1RSC · Structure of an effector induced inactivated state of ribulose bisphosphate… · XBP A476 · binds LYS175, LYS177, LYS201, ASP203, GLU204, HIS294, ARG295, HIS298 and 15 more
  • 4UAT · Crystal structure of CbbY (mutant D10N) from Rhodobacter sphaeroides in complex with… · XBP A301 · binds ASP8, VAL9, ASN10, GLU17, HIS20, PHE24, TYR42, LEU46 and 14 more
  • 4UAU · Crystal structure of CbbY (mutant D10N) from Rhodobacter sphaeroides in complex with… · XBP A301 · binds ASP8, VAL9, ASN10, GLU17, HIS20, PHE24, TYR42, LEU46 and 14 more
  • 1RSC · Structure of an effector induced inactivated state of ribulose bisphosphate… · XBP A476 · binds LYS175, LYS177, LYS201, ASP203, GLU204, HIS294, ARG295, HIS298 and 15 more
  • 4UAT · Crystal structure of cbby (mutant D10N) from rhodobacter sphaeroides in complex with… · XBP A301 · binds ASP8, VAL9, ASN10, GLU17, HIS20, PHE24, TYR42, LEU46 and 14 more
  • 4UAU · Crystal structure of cbby (mutant D10N) from rhodobacter sphaeroides in complex with… · XBP A301 · binds ASP8, VAL9, ASN10, GLU17, HIS20, PHE24, TYR42, LEU46 and 14 more

Residues it binds most

GLY 24, LYS 24, HIS 24, THR 24, GLU 24, ASN 24, ASP 24, ARG 24, LEU 24, PHE 24 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • MES · 2-(N-morpholino)-ethanesulfonic acid

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