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Ligand · XBK

XBK · 4,5-de-epoxypimaricin

XBK, 4,5-de-epoxypimaricin (C33 H47 N O12, 649.7 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
XBK
Formula
C33 H47 N O12
Class
ligand
Structures
2
PDB entries
1

Binding sites

XBK in 2 structures; the first of them:

  • 2XBK · X-ray structure of the substrate-bound cytochrome P450 PimD - a polyene macrolide… · XBK A1399 · binds LEU13, ARG65, VAL77, PHE81, LEU82, LEU85, LEU178, GLY230 and 18 more
  • 2XBK · X-ray structure of the substrate-bound cytochrome P450 pimd - a polyene macrolide… · XBK A1399 · binds LEU13, ARG65, VAL77, PHE81, LEU82, LEU85, LEU178, GLY230 and 18 more

Residues it binds most

LEU 2, GLY 2, SER 2, ARG 2, PHE 2, VAL 2, ALA 2, ASP 2, GLN 2, ILE 2 (residue and the binding sites it lines).

Found with

  • HEM · Protoporphyrin IX containing Fe

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