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Ligand · XBD

XBD · 2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-11-methyl-5-(2,2,2-trifluoroethyl)-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one

XBD, 2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}-11-methyl-5-(2,2,2-trifluoroethyl)-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one (C26 H28 F3 N7 O2, 527.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2…

Component
XBD
Formula
C26 H28 F3 N7 O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

XBD in 2 structures; the first of them:

  • 7KXW · Crystal structure of DCLK1-KD in complex with DCLK1-IN-1 · XBD A701 · binds VAL404, ALA417, LYS419, VAL449, MET465, GLU466, LEU467, VAL468 and 9 more
  • 7KXW · Crystal structure of DCLK1-kd in complex with DCLK1-in-1 · XBD A701 · binds VAL404, ALA417, VAL449, MET465, GLU466, LEU467, VAL468, LYS469 and 6 more

Residues it binds most

VAL 4, ASP 4, GLU 4, GLY 4, LEU 4, LYS 4, ALA 4, MET 4, ASN 3, ILE 1 (residue and the binding sites it lines).

Found with

  • PEG · Di(hydroxyethyl)ether
  • PG4 · Tetraethylene glycol

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