GL1X · GenesisL1 explorer

Ligand · XAM

XAM · (1R,4aS,5S,6S,8aR)-5-{[(5S)-1-(3-O-acetyl-4-O-carbamoyl-6-deoxy-2-O-methyl-alpha-L-talopyranosyl)-4-hydroxy-2-oxo-5-(propan-2-yl)-2,5-dihydro-1H-pyrrol-3-yl]carbonyl}-6-methyl-4-methylidene-1,2,3,4,4a,5,6,8a-octahydronaphthalen-1-yl 2,6-dideoxy-3-C-[(1S)-1-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}ethyl]-beta-D-ribo-hexopyranoside

XAM, (1R,4aS,5S,6S,8aR)-5-{[(5S)-1-(3-O-acetyl-4-O-carbamoyl-6-deoxy-2-O-methyl-alpha-L-talopyranosyl)-4-hydroxy-2-oxo-5-(propan-2-yl)-2,5-dihydro-1H-pyrrol-3-yl]carbonyl}-6-methyl-4-methylidene-1,2,3,4,4a,5,6,8a-octahydronaphthalen-1-yl…

Component
XAM
Formula
C44 H60 Cl2 N4 O14
Class
ligand
Structures
4
PDB entries
2

Binding sites

XAM in 4 structures; the first of them:

  • 4URL · Crystal Structure of Staph ParE43kDa in complex with KBD · XAM A2000 · binds ILE46, ASN49, SER50, GLU53, ILE74, ASP76, ARG79, GLY80 and 16 more
  • 4URM · Crystal Structure of Staph GyraseB 24kDa in complex with Kibdelomycin · XAM A2000 · binds ILE51, ASN54, SER55, ASP57, GLU58, VAL79, ASP81, ARG84 and 19 more
  • 4URL · Crystal structure of staph PARE43KDA in complex with kbd · XAM A2000 · binds ILE46, ASN49, SER50, GLU53, ILE74, ASP76, ARG79, GLY80 and 16 more
  • 4URM · Crystal structure of staph gyraseb 24KDA in complex with kibdelomycin · XAM A2000 · binds ILE51, ASN54, SER55, ASP57, GLU58, VAL79, ASP81, ARG84 and 19 more

Residues it binds most

ILE 12, VAL 12, GLY 12, ALA 12, ASP 12, SER 12, HIS 12, THR 12, ARG 12, ASN 12 (residue and the binding sites it lines).

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