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Ligand · X5A

X5A · N-(4-aminobutyl)acetamide

X5A, N-(4-aminobutyl)acetamide (C6 H14 N2 O, 130.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
X5A
Formula
C6 H14 N2 O
Class
ligand
Structures
2
PDB entries
1

Binding sites

X5A in 2 structures; the first of them:

  • 7KUR · Crystal Structure of Danio rerio Histone Deacetylase 10 Y307F Mutant in Complex with… · X5A A701 · binds GLU24, ALA94, PRO134, HIS136, HIS137, GLY145, PHE146, CYS147 and 8 more
  • 7KUR · Crystal structure of danio rerio histone deacetylase 10 Y307F mutant in complex with… · X5A A701 · binds GLU24, ALA94, PRO134, HIS137, GLY145, PHE146, ASP174, HIS176 and 5 more

Residues it binds most

GLU 2, HIS 2, ASP 2, GLY 2, PHE 2, ALA 2, PRO 2, TRP 2, CYS 1 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • NA · Sodium ion
  • ZN · Zinc ion
  • PO4 · Phosphate ion
  • PEG · Di(hydroxyethyl)ether

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