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Ligand · X12

X12 · 2-[[(2S)-2,6-bis[[(2S)-2,6-bis[[(2R)-2-[[(2R,3R)-2-[[(2R)-2-amino-5-carbamimidamido-pentanoyl]amino]-3-hydroxy-butanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]hexanoyl]amino]hexanoyl]amino]ethanoic acid

X12, 2-[[(2S)-2,6-bis[[(2S)-2,6-bis[[(2R)-2-[[(2R,3R)-2-[[(2R)-2-amino-5-carbamimidamido-pentanoyl]amino]-3-hydroxy-butanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]hexanoyl]amino]hexanoyl]amino]ethanoic acid (C96 H153 N31 O25, 2141.4…

Component
X12
Formula
C96 H153 N31 O25
Class
ligand
Structures
2
PDB entries
1

Binding sites

X12 in 2 structures; the first of them:

  • 3D6G · Fc fragment of IgG1 (Herceptin) with protein-A mimetic peptide dendrimer ligand. · X12 B446 · binds THR250, LEU251, MET252, ILE253, HIS310, GLN311, LEU314, HIS435
  • 3D6G · Fc fragment of IGG1 (herceptin) with protein-a mimetic peptide dendrimer ligand. · X12 B446 · binds THR250, LEU251, MET252, ILE253, HIS310, GLN311, LEU314, HIS435

Residues it binds most

HIS 2, LEU 2, GLN 2, ILE 2, MET 2, THR 2 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • FUC · alpha-L-fucopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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