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Ligand · X0O

X0O · [[(2~{R},3~{S},4~{R},5~{S})-5-(4-azanyl-1-methyl-2-oxidanylidene-pyrimidin-5-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

X0O, [[(2~{R},3~{S},4~{R},5~{S})-5-(4-azanyl-1-methyl-2-oxidanylidene-pyrimidin-5-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate (C10 H18 N3 O14 P3, 497.2 g/mol), in the MolNFT structures on…

Component
X0O
Formula
C10 H18 N3 O14 P3
Class
ligand
Structures
1
PDB entries
1

Binding sites

X0O in 1 structure; the first of them:

  • 8SY7 · E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural… · X0O J1504 · binds ARG678, MET681, ASP814, LYS1073, ARG1106, ARG425, PRO427, ASN458 and 6 more

Residues it binds most

ASP 1, ARG 1, MET 1, ASN 1, G 1, IGU 1, LYS 1, PRO 1 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ZN · Zinc ion

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