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Ligand · WS3

WS3 · 5'-deoxy-5'-[({6-[(alpha-D-galactopyranosyloxy)methyl]pyridin-2-yl}carbonyl)amino]uridine

WS3, 5'-deoxy-5'-[({6-[(alpha-D-galactopyranosyloxy)methyl]pyridin-2-yl}carbonyl)amino]uridine (C22 H28 N4 O12, 540.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
WS3
Formula
C22 H28 N4 O12
Class
ligand
Structures
2
PDB entries
1

Binding sites

WS3 in 2 structures; the first of them:

  • 4KC4 · Structure of the blood group glycosyltransferase AAglyB in complex with a pyridine… · WS3 A403 · binds PHE121, ALA122, ILE123, LYS124, TYR126, TRP181, VAL184, SER185 and 4 more
  • 4KC4 · Structure of the blood group glycosyltransferase aaglyb in complex with a pyridine… · WS3 A403 · binds PHE121, ALA122, ILE123, LYS124, TYR126, TRP181, VAL184, SER185 and 4 more

Residues it binds most

ASP 2, VAL 2, ALA 2, ARG 2, ILE 2, LYS 2, PHE 2, SER 2, TRP 2, TYR 2 (residue and the binding sites it lines).

Found with

  • BHE · octyl 2-O-(6-deoxy-alpha-L-galactopyranosyl)-beta-D-galactopyranoside
  • MN · Manganese (II) ion

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