GL1X · GenesisL1 explorer

Ligand · WMP

WMP · [(1R,5R,6R,8S)-6-(6-aminopurin-9-yl)-3'-[(R)-oxidanyl(phenyl)methyl]spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,9'-8-oxa-9-boranuidabicyclo[4.3.0]nona-1,3,5-triene]-8-yl]methyl dihydrogen phosphate

WMP, [(1R,5R,6R,8S)-6-(6-aminopurin-9-yl)-3'-[(R)-oxidanyl(phenyl)methyl]spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,9'-8-oxa-9-boranuidabicyclo[4.3.0]nona-1,3,5-triene]-8-yl]methyl dihydrogen phosphate (C24 H24 B N5 O9 P -1…

Component
WMP
Formula
C24 H24 B N5 O9 P -1
Class
ligand
Structures
2
PDB entries
1

Binding sites

WMP in 2 structures; the first of them:

  • 4K47 · Structure of the Streptococcus pneumoniae leucyl-tRNA synthetase editing domain bound to… · WMP A501 · binds PHE246, THR247, THR248, ARG249, THR252, TYR327, VAL328, LEU329 and 10 more
  • 4K47 · Structure of the streptococcus pneumoniae leucyl-tRNA synthetase editing domain bound to… · WMP A501 · binds PHE246, THR247, THR248, ARG249, THR252, TYR327, VAL328, LEU329 and 10 more

Residues it binds most

THR 2, VAL 2, TYR 2, ALA 2, ARG 2, ASP 2, GLY 2, HIS 2, LEU 2, LYS 2 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion

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