Ligand · WMK

WMK · (1R,2S,3S,4R,5R,9S,11S,12S,14R)-7-amino-2,4,12-trihydroxy-2-(hydroxymethyl)-10,13,15-trioxa-6,8-diazapentacyclo[7.4.1.1~3,12~.0~5,11~.0~5,14~]pentadec-7-en-8-ium (non-preferred name)

WMK, (1R,2S,3S,4R,5R,9S,11S,12S,14R)-7-amino-2,4,12-trihydroxy-2-(hydroxymethyl)-10,13,15-trioxa-6,8-diazapentacyclo[7.4.1.1~3,12~.0~5,11~.0~5,14~]pentadec-7-en-8-ium (non-preferred name) (C11 H15 N3 O7, 301.2 g/mol), in the MolNFT…

Component: WMK
Formula: C11 H15 N3 O7
Class: ligand
Structures: 1
PDB entries: 1

Binding sites

WMK in 1 structure; the first of them:

8GZ2 · Cryo-EM structure of human NaV1.6/beta1/beta2-4,9-anhydro-tetrodotoxin · WMK B2002 · binds ASP370, TYR371, GLU373, GLU936, GLU939, PHE1412, LYS1413, GLY1414 and 3 more

Residues it binds most

GLU 1, ASP 1, GLY 1, LYS 1, MET 1, PHE 1, TRP 1, TYR 1 (residue and the binding sites it lines).

Found with

BMA · beta-D-mannopyranose
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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