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Ligand · W6Y

W6Y · 5-[2-(5-carboxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid

W6Y, 5-[2-(5-carboxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid (C18 H14 N2 O6, 354.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
W6Y
Formula
C18 H14 N2 O6
Class
ligand
Structures
2
PDB entries
1

Binding sites

W6Y in 2 structures; the first of them:

  • 3W6Y · Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-2-199 · W6Y A401 · binds LYS43, ARG50, ASN53, ASN67, SER68, MET69, GLY70, LEU71 and 9 more
  • 3W6Y · Structure of trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-2-199 · W6Y A401 · binds LYS43, ARG50, ASN53, ASN67, SER68, MET69, GLY70, LEU71 and 9 more

Residues it binds most

SER 4, ASN 4, LYS 4, PRO 4, ARG 4, CYS 4, GLY 4, LEU 4, MET 4 (residue and the binding sites it lines).

Found with

  • FMN · Flavin mononucleotide
  • NCO · Cobalt hexammine(iii)
  • GOL · Glycerol

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