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Ligand · W0F

W0F · [[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

W0F, [[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate (C11 H18 N5 O14 P3, 537.2 g/mol), in the MolNFT structures on…

Component
W0F
Formula
C11 H18 N5 O14 P3
Class
ligand
Structures
16
PDB entries
16

Binding sites

W0F in 16 structures; the first of them:

  • 8WAK · Structure of transcribing complex 2 (TC2), the initially transcribing complex with Pol II… · W0F Z2500 · binds G2L2, DC-2, DC-1, ARG460, PRO462, ASP495, ASP497, THR854 and 5 more
  • 8WAL · Structure of transcribing complex 3 (TC3), the initially transcribing complex with Pol II… · W0F Z2500 · binds G2L3, DC-3, DC-2, ARG460, PRO462, ASP495, ASP497, THR854 and 5 more
  • 8WAN · Structure of transcribing complex 4 (TC4), the initially transcribing complex with Pol II… · W0F p1201 · binds G2L4, DC-4, DC-3, ARG460, PRO462, ASP495, ASP497, THR854 and 5 more
  • 8WAO · Structure of transcribing complex 5 (TC5), the initially transcribing complex with Pol II… · W0F p1201 · binds G2L5, DC-5, DC-4, ARG460, PRO462, ASP495, ASP497, THR854 and 5 more
  • 8WAP · Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II… · W0F p1201 · binds G2L6, DC-6, DC-5, ARG460, PRO462, ASP495, ASP497, THR854 and 5 more
  • 8WAQ · Structure of transcribing complex 7 (TC7), the initially transcribing complex with Pol II… · W0F p1201 · binds G2L7, DC-7, DC-6, ARG460, PRO462, ASP495, ASP497, THR854 and 5 more
  • 8WAR · Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II… · W0F p1201 · binds G2L8, DC-8, DC-7, ARG460, PRO462, ASP495, ASP497, THR854 and 5 more
  • 8WAS · Structure of transcribing complex 9 (TC9), the initially transcribing complex with Pol II… · W0F p1201 · binds G2L9, DC-9, DC-8, ARG460, PRO462, ASP495, ASP497, THR854 and 5 more
  • 8WAT · De novo transcribing complex 10 (TC10), the early elongation complex with Pol II… · W0F p1201 · binds DC-10, DC-9, G2L10, ARG460, PRO462, ASN493, ASP495, ASP497 and 6 more
  • 8WAU · De novo transcribing complex 11 (TC11), the early elongation complex with Pol II… · W0F Z2500 · binds DC-11, DC-10, G2L11, ARG460, PRO462, ASN493, ASP495, ASP497 and 6 more
  • 8WAV · De novo transcribing complex 12 (TC12), the early elongation complex with Pol II… · W0F p1201 · binds DC-12, DC-11, G2L12, ARG460, PRO462, ASN493, ASP495, ASP497 and 6 more
  • 8WAW · De novo transcribing complex 13 (TC13), the early elongation complex with Pol II… · W0F p1201 · binds DC-13, DC-12, G2L13, ARG460, PRO462, ASN493, ASP495, ASP497 and 6 more
  • 8WAX · De novo transcribing complex 14 (TC14), the early elongation complex with Pol II… · W0F p1201 · binds DC-14, DC-13, G2L14, ARG460, PRO462, ASN493, ASP495, ASP497 and 6 more
  • 8WAY · De novo transcribing complex 15 (TC15), the early elongation complex with Pol II… · W0F p1201 · binds DC-15, DC-14, G2L15, ARG460, PRO462, ASN493, ASP495, ASP497 and 6 more
  • 8WAZ · De novo transcribing complex 16 (TC16), the early elongation complex with Pol II… · W0F p1201 · binds DC-16, DC-15, G2L16, ARG460, PRO462, ASN493, ASP495, ASP497 and 6 more
  • 8WB0 · De novo transcribing complex 17 (TC17), the early elongation complex with Pol II… · W0F p1201 · binds DC-17, DC-16, G2L17, ARG460, PRO462, ASN493, ASP495, ASP497 and 6 more

Residues it binds most

ARG 16, ASP 16, DC 16, G2L 16, LYS 16, PRO 16, THR 16, TYR 16, ASN 8 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ZN · Zinc ion
  • SF4 · Iron/sulfur cluster

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