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Ligand · VTX

VTX · Vortioxetine

VTX, Vortioxetine (C18 H22 N2 S, 298.4 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
VTX
Formula
C18 H22 N2 S
Class
ligand
Structures
3
PDB entries
3

Binding sites

VTX in 3 structures; the first of them:

  • 8AW2 · Mouse serotonin 5-HT3A receptor in complex with vortioxetine · VTX A503 · binds ASN101, THR154, SER155, TRP156, PHE199, ILE201, TYR207, ILE44 and 9 more
  • 8BLA · Human serotonin 5-HT3A receptor in complex with vortioxetine (detergent, ECD only… · VTX A502 · binds THR176, SER177, TRP178, PHE221, MET223, GLU224, TYR229, ILE66 and 7 more
  • 8BLB · Human serotonin 5-HT3A receptor in complex with vortioxetine (nanodiscs, ECD… · VTX A502 · binds ASN123, THR176, SER177, TRP178, PHE221, MET223, GLU224, TYR229 and 7 more

Residues it binds most

TYR 15, ARG 15, TRP 15, ILE 15, SER 15, PHE 15, THR 15, ASN 10, GLU 10, MET 10 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • BMA · beta-D-mannopyranose
  • CL · Chloride ion

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