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Ligand · VPU

VPU · [[(3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-(pentanoylamino)oxan-2-ylidene]amino] N-phenylcarbamate

VPU, [[(3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-(pentanoylamino)oxan-2-ylidene]amino] N-phenylcarbamate (C18 H25 N3 O7, 395.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with…

Component
VPU
Formula
C18 H25 N3 O7
Class
ligand
Structures
2
PDB entries
1

Binding sites

VPU in 2 structures; the first of them:

  • 3GSM · Vibrio cholerae family 3 glycoside hydrolase (NagZ) bound to N-Valeryl-PUGNAc · VPU A341 · binds ILE30, PHE32, ASP62, GLU64, ARG70, PHE114, ALA126, ILE127 and 5 more
  • 3GSM · Vibrio cholerae family 3 glycoside hydrolase (nagz) bound to N- valeryl-pugnac · VPU A341 · binds ILE30, PHE32, ASP62, GLU64, ARG70, PHE114, ALA126, ILE127 and 5 more

Residues it binds most

ARG 2, HIS 2, ILE 2, PHE 2, ALA 2, ASP 2, GLU 2, LYS 2, MET 2 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol

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