GL1X · GenesisL1 explorer

Ligand · VPP

VPP · (2S,4S)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid

VPP, (2S,4S)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid (C23 H29 N5 O8 S, 535.6 g/mol), in the MolNFT structures on GenesisL1…

Component
VPP
Formula
C23 H29 N5 O8 S
Class
ligand
Structures
4
PDB entries
2

Binding sites

VPP in 4 structures; the first of them:

  • 4KQQ · CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX… · VPP A601 · binds SER294, LYS297, VAL333, SER349, ASN351, THR404, TYR407, TYR409 and 12 more
  • 4KQR · CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX… · VPP A601 · binds SER294, LYS297, VAL333, SER349, ASN351, THR404, TYR407, TYR409 and 11 more
  • 4KQQ · Crystal structure of penicillin-binding protein 3 from pseudomonas aeruginosa in complex… · VPP A601 · binds SER294, LYS297, VAL333, SER349, ASN351, THR404, TYR407, TYR409 and 12 more
  • 4KQR · Crystal structure of penicillin-binding protein 3 from pseudomonas aeruginosa in complex… · VPP A601 · binds SER294, LYS297, VAL333, SER349, ASN351, THR404, TYR407, TYR409 and 11 more

Residues it binds most

TYR 8, GLY 8, SER 8, THR 8, LYS 8, ALA 8, ARG 8, ASN 8, PHE 8, VAL 8 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • GOL · Glycerol
  • IMD · Imidazole

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.