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Ligand · VPA

VPA · 2-phenyl-N-(6-O-beta-D-xylopyranosyl-beta-D-glucopyranosyl)ethylamidine

VPA, 2-phenyl-N-(6-O-beta-D-xylopyranosyl-beta-D-glucopyranosyl)ethylamidine (C19 H28 N2 O9, 428.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the…

Component
VPA
Formula
C19 H28 N2 O9
Class
ligand
Structures
2
PDB entries
1

Binding sites

VPA in 2 structures; the first of them:

  • 3WQ5 · beta-Primeverosidase in complex with disaccharide substrate-analog… · VPA A601 · binds GLN53, HIS157, TRP158, ASN202, GLU203, TRP205, SER206, LEU217 and 12 more
  • 3WQ5 · Beta-primeverosidase in complex with disaccharide substrate-analog N… · VPA A601 · binds GLN53, HIS157, TRP158, ASN202, GLU203, TRP205, SER206, LEU217 and 12 more

Residues it binds most

TRP 4, GLU 4, ASN 4, GLN 4, LEU 4, PHE 4, SER 4, ALA 2, ASP 2, GLY 2 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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