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Ligand · VOV

VOV · harderoheme (III)

VOV, harderoheme (III) (C35 H34 Fe N4 O6, 662.5 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
VOV
Formula
C35 H34 Fe N4 O6
Class
ligand
Structures
4
PDB entries
2

Binding sites

VOV in 4 structures; the first of them:

  • 6FXQ · Structure of coproheme decarboxylase from Listeria monocytogenes during turnover · VOV A303 · binds GLU109, LEU110, SER111, TYR113, ARG133, TYR147, MET149, LYS151 and 17 more
  • 6XUB · Structure of coproheme decarboxylase from Corynebacterium diphteriae in complex with… · VOV A301 · binds ALA112, GLU113, PHE114, ASN115, HIS118, TYR135, PHE137, ARG139 and 12 more
  • 6FXQ · Structure of coproheme decarboxylase from listeria monocytogenes during turnover · VOV A303 · binds LEU110, SER111, TYR113, ARG133, TYR147, MET149, LYS151, TRP159 and 13 more
  • 6XUB · Structure of coproheme decarboxylase from corynebacterium diphteriae in complex with… · VOV A301 · binds ALA112, GLU113, PHE114, ASN115, HIS118, TYR135, PHE137, ARG139 and 12 more

Residues it binds most

LEU 20, MET 20, PHE 20, TRP 20, ARG 20, VAL 20, HIS 20, TYR 20, ILE 10, GLY 16 (residue and the binding sites it lines).

Found with

  • FEC · 1,3,5,8-tetramethyl-porphine-2,4,6,7-tetrapropionic acid ferrous complex
  • NA · Sodium ion
  • MPD · (4S)-2-methyl-2,4-pentanediol

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