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Ligand · VON

VON · (3~{S},4~{S},5~{S},6~{R})-4,5,6-tris(oxidanyl)piperidine-3-carboxylic acid

VON, (3~{S},4~{S},5~{S},6~{R})-4,5,6-tris(oxidanyl)piperidine-3-carboxylic acid (C6 H11 N O5, 177.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
VON
Formula
C6 H11 N O5
Class
ligand
Structures
3
PDB entries
3

Binding sites

VON in 3 structures; the first of them:

  • 8OHT · Crystal structure of Beta-glucuronidase from Acidobacterium capsulatum in complex with… · VON AAA501 · binds GLU45, GLY79, ASN80, ASP105, ASN172, GLU173, HIS241, TYR243 and 7 more
  • 8OHW · Crystal structure of heparanase from Burkholderia pseudomallei in complex with siastatin… · VON AAA501 · binds GLU36, GLY68, ASN69, ASN143, GLU144, HIS213, TYR215, GLU255 and 5 more
  • 8OHX · Crystal structure of Beta-glucuronidase from Escherichia coli in complex with siastatin B… · VON AAA601 · binds ASP163, HIS330, ASN412, GLU413, ASN466, TYR468, TYR472, GLU504 and 4 more

Residues it binds most

GLU 5, ASN 5, TYR 5, GLY 3, HIS 5, TRP 4, ASP 3, ARG 2, LYS 2, CYS 1 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol

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