GL1X · GenesisL1 explorer

Ligand · VNR

VNR · 1-deoxy-1-[(4aR)-4a-[(2Z)-2-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)but-2-en-1-yl]-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol

VNR, 1-deoxy-1-[(4aR)-4a-[(2Z)-2-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)but-2-en-1-yl]-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol (C23 H35 N4 O16 P3, 716.5 g/mol), in the…

Component
VNR
Formula
C23 H35 N4 O16 P3
Class
ligand
Structures
2
PDB entries
1

Binding sites

VNR in 2 structures; the first of them:

  • 3B03 · Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex… · VNR A669 · binds ARG7, LYS8, HIS11, VAL12, ALA15, THR65, GLY66, MET67 and 25 more
  • 3B03 · Crystal structure of sulfolobus shibatae isopentenyl diphosphate isomerase in complex… · VNR A669 · binds ARG7, LYS8, HIS11, VAL12, ALA15, THR65, GLY66, MET67 and 25 more

Residues it binds most

GLY 8, ARG 8, GLN 8, SER 8, ALA 8, ASN 8, GLU 8, HIS 8, LEU 8, LYS 8 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion

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