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Ligand · VMP

VMP · N-[[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]carbamoyl]naphthalene-2-carboxamide

VMP, N-[[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]carbamoyl]naphthalene-2-carboxamide (C18 H20 N2 O7, 376.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with…

Component
VMP
Formula
C18 H20 N2 O7
Class
ligand
Structures
2
PDB entries
1

Binding sites

VMP in 2 structures; the first of them:

  • 3ZCT · Rabbit muscle glycogen phosphorylase b in complex with N-(2-naphthoyl)… · VMP A1838 · binds ARG60, VAL64, TRP67, PRO188, TRP189, GLU190, LYS191, ALA192 and 1 more
  • 3ZCT · Rabbit muscle glycogen phosphorylase B in complex with N-(2-naphthoyl)… · VMP A1838 · binds ARG60, VAL64, TRP67, PRO188, TRP189, GLU190, LYS191, ALA192 and 1 more

Residues it binds most

ASN 2, ALA 4, GLU 4, GLY 2, ARG 4, HIS 2, LEU 2, PHE 2, PRO 2, TRP 2 (residue and the binding sites it lines).

Found with

  • IMP · Inosinic acid
  • PLP · Pyridoxal-5'-phosphate

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