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Ligand · VMF

VMF · (2~{R},3~{R},4~{S},5~{R})-2,5-bis(hydroxymethyl)pyrrolidine-3,4-diol

VMF, (2~{R},3~{R},4~{S},5~{R})-2,5-bis(hydroxymethyl)pyrrolidine-3,4-diol (C6 H13 N O4, 163.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues…

Component
VMF
Formula
C6 H13 N O4
Class
ligand
Structures
1
PDB entries
1

Binding sites

VMF in 1 structure; the first of them:

  • 8K7G · Crystal structure of human lysosomal alpha-galactosidase A in complex with… · VMF A502 · binds TRP47, ASP92, ASP93, TYR134, CYS142, ALA143, LYS168, ASP170 and 5 more

Residues it binds most

ASP 2, TYR 2, ALA 2, ARG 2, CYS 2, GLU 2, LEU 2, LYS 2, TRP 2 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • SO4 · Sulfate ion

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