Ligand · VLD

VLD · (2S)-2-({4-[({(6R)-2,4-diamino-5-[(1-{(2R,4S,5R)-4-hydroxy-5-[(phosphonooxy)methyl]tetrahydrofuran-2-yl}-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)methyl]-5,6,7,8-tetrahydropyrido[3,2-d]pyrimidin-6-yl}methyl)amino]benzoyl}amino)pentanedioic acid (non-preferred name)

VLD, (2S)-2-({4-[({(6R)-2,4-diamino-5-[(1-{(2R,4S,5R)-4-hydroxy-5-[(phosphonooxy)methyl]tetrahydrofuran-2-yl}-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)methyl]-5,6,7,8-tetrahydropyrido[3,2-d]pyrimidin-6-yl}methyl)amino]benzoyl}amino)pentan…

Component: VLD
Formula: C30 H38 N9 O13 P
Class: ligand
Structures: 1
PDB entries: 1

Binding sites

VLD in 1 structure; the first of them:

7JX1 · E. coli TSase complex with a bi-substrate reaction intermediate analog · VLD B301 · binds ARG126, ARG21, HIS51, SER54, ILE79, TRP80, TRP83, TYR94 and 16 more

Residues it binds most

ARG 1, HIS 1, CYS 1, LEU 1, SER 1, TRP 1, TYR 1, ALA 1, ASN 1, ASP 1 (residue and the binding sites it lines).

Found with

TMP · Thymidine-5'-phosphate
VLA · N-(4-{[(2,4-diamino-7,8-dihydropyrido[3,2-d]pyrimidin-6-yl)methyl]amino}benzene-1-carbonyl)-L-glutamic acid
PO4 · Phosphate ion

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