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Ligand · VKH

VKH · (1~{R},2~{R},3~{S},4~{R},5~{R},6~{R})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol

VKH, (1~{R},2~{R},3~{S},4~{R},5~{R},6~{R})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol (C7 H16 N O4 +1, 178.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues…

Component
VKH
Formula
C7 H16 N O4 +1
Class
ligand
Structures
1
PDB entries
1

Binding sites

VKH in 1 structure; the first of them:

  • 7OP6 · Bacteroides thetaiotaomicron mannosidase GH2 with beta-manno- configured cyclophellitol… · VKH B932 · binds TRP198, ASP199, TRP200, CYS424, GLU462, TRP533, TYR537, GLU555 and 2 more

Residues it binds most

TRP 1, GLU 1, ASP 1, CYS 1, TYR 1 (residue and the binding sites it lines).

Found with

  • JIT · Beta-D-manno-configured cyclophellitol aziridine
  • JIW · Beta-D-manno-configured cyclophellitol aziridine, reacted form
  • NA · Sodium ion
  • BR · Bromide ion
  • CL · Chloride ion
  • EDO · 1,2-ethanediol

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