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Ligand · VHY

VHY · (2R)-3-(phosphonooxy)propane-1,2-diyl dibutanoate

VHY, (2R)-3-(phosphonooxy)propane-1,2-diyl dibutanoate (C11 H21 O8 P, 312.3 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
VHY
Formula
C11 H21 O8 P
Class
ligand
Structures
5
PDB entries
3

Binding sites

VHY in 5 structures; the first of them:

  • 7JRU · Phospholipase D engineered mutant bound to phosphatidic acid (8 hour soak) · VHY A603 · binds LEU88, ALA123, TYR126, LEU164, TRP166, HIS168, ASN185, GLN337 and 9 more
  • 7JRW · Phospholipase D engineered mutant bound to phosphatidic acid (5 day soak) · VHY A603 · binds LEU88, ALA123, ILE125, TYR126, LEU164, TRP166, HIS168, GLN337 and 11 more
  • 7JRU · Phospholipase D engineered mutant bound to phosphatidic acid (8 hour soak) · VHY A603 · binds LEU88, ALA123, TYR126, TRP166, HIS168, GLN337, VAL380, GLY381 and 5 more
  • 7JRV · Phospholipase D engineered mutant bound to phosphatidic acid (30 minute soak) · VHY A603 · binds LEU88, ALA123, TRP166, HIS168, GLN337, VAL380, GLY381, HIS442 and 4 more
  • 7JRW · Phospholipase D engineered mutant bound to phosphatidic acid (5 day soak) · VHY A603 · binds LEU88, ALA123, LEU164, TRP166, HIS168, GLN337, LEU346, VAL380 and 6 more

Residues it binds most

LEU 5, HIS 5, TYR 5, ALA 5, ASN 5, GLY 5, GLN 5, LYS 5, TRP 5, VAL 5 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol
  • MES · 2-(N-morpholino)-ethanesulfonic acid

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