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Ligand · VHR

VHR · Binuclear [FeFe], di(thiomethyl)amine, carbon monoxide, cyanide cluster (-CN form)

VHR, Binuclear [FeFe], di(thiomethyl)amine, carbon monoxide, cyanide cluster (-CN form) (C8 H5 Fe2 N4 O3 S2 -1, 381.0 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues…

Component
VHR
Formula
C8 H5 Fe2 N4 O3 S2 -1
Class
ligand
Structures
4
PDB entries
4

Binding sites

VHR in 4 structures; the first of them:

  • 8AJ6 · cyanide-bound [FeFe]-hydrogenase I from Clostridium pasteurianum (CpI) · VHR A609 · binds ALA230, PRO231, SER232, ILE268, ALA272, CYS299, CYS300, SER323 and 11 more
  • 8AP2 · cyanide-bound [FeFe]-hydrogenase I from Clostridium pasteurianum (CpI) at 1.39 Angstrom · VHR A612 · binds ALA230, PRO231, SER232, ILE268, ALA272, CYS299, CYS300, SER323 and 11 more
  • 8BJ7 · Desulfovibrio desulfuricans FeFe Hydrogenase C178A mutant in Hinact-like state · VHR A404 · binds ALA107, PRO108, ALA109, THR145, ALA149, ALA178, CYS179, SER202 and 11 more
  • 8BJ8 · Desulfovibrio desulfuricans FeFe Hydrogenase C178A mutant in Htrans-like state · VHR A401 · binds ALA107, PRO108, ALA109, THR145, ALA149, ALA178, CYS179, SER202 and 11 more

Residues it binds most

CYS 6, PRO 6, ALA 6, MET 6, SER 6, GLY 6, ILE 6, LYS 6, PHE 6, VAL 6 (residue and the binding sites it lines).

Found with

  • SF4 · Iron/sulfur cluster
  • FES · Fe2/s2 (inorganic) cluster
  • MG · Magnesium ion
  • CL · Chloride ion
  • GOL · Glycerol

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