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Ligand · VGB

VGB · (5R,6R,7R,8S)-6,7-dihydroxy-5-(hydroxymethyl)-2-(2-phenylethyl)-8-(propanoylamino)-5,6,7,8-tetrahydro-1H-imidazo[1,2-a]pyridin-4-ium

VGB, (5R,6R,7R,8S)-6,7-dihydroxy-5-(hydroxymethyl)-2-(2-phenylethyl)-8-(propanoylamino)-5,6,7,8-tetrahydro-1H-imidazo[1,2-a]pyridin-4-ium (C19 H26 N3 O4 +1, 360.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB…

Component
VGB
Formula
C19 H26 N3 O4 +1
Class
ligand
Structures
2
PDB entries
1

Binding sites

VGB in 2 structures; the first of them:

  • 2WB5 · GlcNAcstatins are nanomolar inhibitors of human O-GlcNAcase inducing cellular… · VGB A1628 · binds GLY187, PHE188, TYR189, LYS218, ASP297, ASP298, VAL331, TYR335 and 16 more
  • 2WB5 · Glcnacstatins are nanomolar inhibitors of human O-glcnacase inducing cellular… · VGB A1628 · binds GLY187, PHE188, TYR189, LYS218, ASP297, ASP298, VAL331, TYR335 and 16 more

Residues it binds most

ASP 4, VAL 4, TYR 4, ASN 4, LEU 4, LYS 4, TRP 4, PHE 4, GLY 4, SER 4 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • CL · Chloride ion

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