GL1X · GenesisL1 explorer

Ligand · VEE

VEE · (1R,2S,3R,4S,5R,6R)-5-(8-azidooctylamino)-6-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol

VEE, (1R,2S,3R,4S,5R,6R)-5-(8-azidooctylamino)-6-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol (C15 H30 N4 O4, 330.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within…

Component
VEE
Formula
C15 H30 N4 O4
Class
ligand
Structures
2
PDB entries
2

Binding sites

VEE in 2 structures; the first of them:

  • 7ODJ · Exo-mannosidase from Cellvibrio mixtus bound to N-alkyl mannocyclophellitol aziridine · VEE AAA606 · binds TRP135, TRP137, TRP162, MET166, ASN214, GLU215, ARG217, GLU256 and 9 more
  • 7OP7 · Bacteroides thetaiotaomicron mannosidase GH2 with beta-manno- configured N-alkyl… · VEE A911 · binds TRP198, ASP199, TRP200, TRP395, CYS424, ASN461, GLU462, TRP470 and 3 more

Residues it binds most

TRP 3, GLU 3, ASN 3, ASP 2, CYS 2, TYR 2, ARG 1, GLN 1, MET 1, PRO 1 (residue and the binding sites it lines).

Found with

  • BR · Bromide ion
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • ACT · Acetate ion
  • EDO · 1,2-ethanediol

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