GL1X · GenesisL1 explorer

Ligand · VDG

VDG · (2S)-2-[[(2S,3S,4S)-5-aminocarbonyloxy-2-azanyl-3,4-bis(oxidanyl)pentanoyl]amino]-2-[(2R,3S,4R,5R)-5-[5-(hydroxymethyl)-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]ethanoic acid

VDG, (2S)-2-[[(2S,3S,4S)-5-aminocarbonyloxy-2-azanyl-3,4-bis(oxidanyl)pentanoyl]amino]-2-[(2R,3S,4R,5R)-5-[5-(hydroxymethyl)-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]ethanoic acid (C17 H25 N5 O13, 507.4 g/mol), in…

Component
VDG
Formula
C17 H25 N5 O13
Class
ligand
Structures
1
PDB entries
1

Binding sites

VDG in 1 structure; the first of them:

  • 8K3P · S. cerevisiae Chs1 in complex with polyoxin B · VDG A1302 · binds THR453, MET454, TYR455, GLU457, ASP500, GLN576, LYS578, PRO675 and 6 more

Residues it binds most

ASP 2, GLN 2, ALA 2, ARG 2, GLU 2, GLY 2, MET 2, PRO 2, THR 2, TRP 2 (residue and the binding sites it lines).

Found with

  • POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate

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