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Ligand · VB4

VB4 · (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy) methyl]pyridin-4-yl}methylidene)-D-tryptophan

VB4, (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy) methyl]pyridin-4-yl}methylidene)-D-tryptophan (C19 H20 N3 O7 P, 433.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
VB4
Formula
C19 H20 N3 O7 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

VB4 in 2 structures; the first of them:

  • 6XOY · Salmonella typhimurium tryptophan synthase complexed with D-tryptophan and… · VB4 B401 · binds ALA85, HIS86, LYS87, GLU109, THR110, GLY111, ALA112, GLY113 and 22 more
  • 6XOY · Salmonella typhimurium tryptophan synthase complexed with D-tryptophan and… · VB4 B401 · binds ALA85, HIS86, LYS87, GLU109, THR110, GLY111, ALA112, GLY113 and 19 more

Residues it binds most

GLY 2, ALA 2, CYS 2, GLU 2, HIS 2, LEU 2, SER 2, THR 2, ASN 2, GLN 2 (residue and the binding sites it lines).

Found with

  • 1GP · Sn-glycerol-1-phosphate
  • NA · Sodium ion
  • DMS · Dimethyl sulfoxide

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