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Ligand · VA5

VA5 · 9-{5-O-[(R)-{[(R)-[(S)-chloro(fluoro) phosphonomethyl](hydroxy)phosphoryl]oxy}(hydroxy) phosphoryl]-2-deoxy-alpha-D-threo-pentofuranosyl}-9H-purin-6-amine

VA5, 9-{5-O-[(R)-{[(R)-[(S)-chloro(fluoro) phosphonomethyl](hydroxy)phosphoryl]oxy}(hydroxy) phosphoryl]-2-deoxy-alpha-D-threo-pentofuranosyl}-9H-purin-6-amine (C11 H16 Cl F N5 O11 P3, 541.6 g/mol), in the MolNFT structures on GenesisL1…

Component
VA5
Formula
C11 H16 Cl F N5 O11 P3
Class
ligand
Structures
1
PDB entries
1

Binding sites

VA5 in 1 structure; the first of them:

  • 6CR9 · Ternary complex crystal structure of DNA polymerase beta with a dideoxy terminated primer… · VA5 A401 · binds DT6, DG7, DOC10, GLY179, SER180, ARG183, SER188, GLY189 and 9 more

Residues it binds most

ASP 1, GLY 1, SER 1, ARG 1, ASN 1, DG 1, DOC 1, DT 1, PHE 1, THR 1 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • NA · Sodium ion
  • CL · Chloride ion

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