GL1X · GenesisL1 explorer

Ligand · V6D

V6D · (3S,6Z,8E,11S,15R)-15-amino-3-[(1E,3E,5E)-7-(dimethylamino)-2,5-dimethylhepta-1,3,5-trien-1-yl]-9, 11-dimethyl-4,12-dioxa-20-thia-21-azabicyclo[16.2.1]henicosa-1(21),6,8,18-tetraene-5,13-dione

V6D, (3S,6Z,8E,11S,15R)-15-amino-3-[(1E,3E,5E)-7-(dimethylamino)-2,5-dimethylhepta-1,3,5-trien-1-yl]-9, 11-dimethyl-4,12-dioxa-20-thia-21-azabicyclo[16.2.1]henicosa-1(21),6,8,18-tetraene-5,13-dione (C30 H43 N3 O4 S, 541.8 g/mol), in the…

Component
V6D
Formula
C30 H43 N3 O4 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

V6D in 2 structures; the first of them:

  • 6XKI · Crystal structure of eIF4A-I in complex with RNA bound to des-MePateA, a pateamine A… · V6D A503 · binds ARG110, PRO159, GLY160, PHE163, ASP164, ASN167, GLN195, ASP198 and 5 more
  • 6XKI · Crystal structure of EIF4A-I in complex with RNA bound to des-mepatea, a pateamine a… · V6D A503 · binds ARG110, PRO159, GLY160, PHE163, ASP164, ASN167, GLN195, ASP198 and 5 more

Residues it binds most

ASP 2, ARG 2, GLY 2, A 2, ASN 2, G 2, GLN 2, PHE 2, PRO 2 (residue and the binding sites it lines).

Found with

  • ANP · Phosphoaminophosphonic acid-adenylate ester
  • MG · Magnesium ion

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.