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Ligand · V5P

V5P · lignostilbene

V5P, lignostilbene (C16 H16 O4, 272.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
V5P
Formula
C16 H16 O4
Class
ligand
Structures
2
PDB entries
1

Binding sites

V5P in 2 structures; the first of them:

  • 6XM8 · Crystal structure of lignostilbene bound to Co-LSD4 from Sphingobium sp. strain SYK-6 · V5P A502 · binds PRO45, PHE59, TYR101, ARG102, ASN120, THR121, LYS134, GLU135 and 10 more
  • 6XM8 · Crystal structure of lignostilbene bound to co-LSD4 from sphingobium sp. strain syk-6 · V5P A502 · binds PHE59, TYR101, ARG102, ASN120, THR121, LYS134, GLU135, MET216 and 8 more

Residues it binds most

PHE 2, GLU 2, HIS 2, MET 2, ARG 2, ASN 2, LEU 2, LYS 2, SER 2, THR 2 (residue and the binding sites it lines).

Found with

  • CO · Cobalt (II) ion
  • MG · Magnesium ion
  • DMS · Dimethyl sulfoxide

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