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Ligand · V3M

V3M · 2-deoxy-2-fluoro-alpha-D-arabinofuranose

V3M, 2-deoxy-2-fluoro-alpha-D-arabinofuranose (C5 H9 F O4, 152.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
V3M
Formula
C5 H9 F O4
Class
sugar
Structures
2
PDB entries
1

Binding sites

V3M in 2 structures; the first of them:

  • 1S2D · Purine 2'-Deoxyribosyl complex with arabinoside: Ribosylated Intermediate (AraA) · V3M A202 · binds TYR11, GLY13, SER14, TYR17, PRO44, PHE45, ASP75, ASP95 and 3 more
  • 1S2D · Purine 2'-deoxyribosyl complex with arabinoside: ribosylated intermediate (araa) · V3M A202 · binds TYR11, GLY13, SER14, TYR17, PRO44, PHE45, ASP75, ASP95 and 3 more

Residues it binds most

ASP 6, GLY 6, SER 6, TYR 6, PRO 6, GLU 6, PHE 6 (residue and the binding sites it lines).

Found with

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