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Ligand · V3D

V3D · (3S)-3-{[N-(4-methoxy-1H-indole-2-carbonyl)-L-leucyl]amino}-2-oxo-4-[(3S)-2-oxopyrrolidin-3-yl]butyl 2-cyanobenzoate

V3D, (3S)-3-{[N-(4-methoxy-1H-indole-2-carbonyl)-L-leucyl]amino}-2-oxo-4-[(3S)-2-oxopyrrolidin-3-yl]butyl 2-cyanobenzoate (C32 H35 N5 O7, 601.7 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding…

Component
V3D
Formula
C32 H35 N5 O7
Class
ligand
Structures
2
PDB entries
1

Binding sites

V3D in 2 structures; the first of them:

  • 6XHN · Covalent complex of SARS-CoV main protease with… · V3D A9001 · binds HIS41, PHE140, LEU141, ASN142, GLY143, SER144, CYS145, HIS163 and 9 more
  • 6XHN · Covalent complex of SARS-cov main protease with 4-methoxy-N-[(2S)-4… · V3D A9001 · binds HIS41, PHE140, LEU141, ASN142, GLY143, SER144, CYS145, HIS163 and 9 more

Residues it binds most

HIS 4, MET 4, ALA 4, ASN 4, CYS 4, GLN 4, GLU 4, GLY 4, LEU 4, PHE 4 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol

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