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Ligand · V12

V12 · 5'-[(1H-benzimidazol-2-ylacetyl)amino]-5'-deoxycytidine

V12, 5'-[(1H-benzimidazol-2-ylacetyl)amino]-5'-deoxycytidine (C18 H20 N6 O5, 400.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
V12
Formula
C18 H20 N6 O5
Class
ligand
Structures
2
PDB entries
1

Binding sites

V12 in 2 structures; the first of them:

  • 2V2V · IspE in complex with ligand · V12 A1277 · binds GLY23, TYR24, HIS25, ILE27, GLY90, LYS145, SER168, SER169 and 4 more
  • 2V2V · Ispe in complex with ligand · V12 A1277 · binds GLY23, TYR24, HIS25, ILE27, GLY90, LYS145, SER168, SER169 and 4 more

Residues it binds most

GLY 4, SER 4, TYR 4, HIS 4, ILE 4, LYS 4, THR 4, ARG 2 (residue and the binding sites it lines).

Found with

  • BR · Bromide ion
  • SO4 · Sulfate ion
  • GOL · Glycerol

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