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Ligand · URM

URM · (((2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)methyl)phosphonic (((2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric) anhydride

URM, (((2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)methyl)phosphonic (((2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric) anhydride (C16 H26 N2 O16…

Component
URM
Formula
C16 H26 N2 O16 P2
Class
ligand
Structures
6
PDB entries
6

Binding sites

URM in 6 structures; the first of them:

  • 5C38 · Crystal structure of AABB + UDP-C-Gal + DI · URM A401 · binds PHE121, ALA122, ILE123, LYS124, TYR126, ARG188, ASP211, VAL212 and 9 more
  • 5C3A · Crystal structure of ABBA + UDP-C-Gal (short soak) + DI · URM A402 · binds PHE121, ALA122, ILE123, LYS124, TYR126, VAL184, SER185, ARG188 and 10 more
  • 5C3B · Crystal structure of ABBA + UDP-C-Gal (long soak) + DI · URM A403 · binds PHE121, ALA122, ILE123, LYS124, TYR126, ARG188, ASP211, VAL212 and 9 more
  • 5C3D · Crystal structure of ABBB + UDP-C-Gal (short soak) + DI · URM A403 · binds PHE121, ALA122, ILE123, LYS124, TYR126, ARG188, ASP211, VAL212 and 7 more
  • 5C47 · Crystal structure of ABBB + UDP-C-Gal (long soak) + DI · URM A404 · binds PHE121, ALA122, ILE123, LYS124, TYR126, ARG188, ASP211, VAL212 and 9 more
  • 5C48 · Crystal structure of GTB + UDP-C-Gal + DI · URM A403 · binds PHE121, ALA122, ILE123, LYS124, TYR126, ARG188, ASP211, VAL212 and 9 more

Residues it binds most

ASP 6, LYS 6, ALA 6, TYR 6, GLY 6, VAL 6, ARG 6, GLU 6, HIS 6, ILE 6 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • DA8 · octyl 3-deoxy-2-O-(6-deoxy-alpha-L-galactopyranosyl)-beta-D-xylo-hexopyranoside
  • PG0 · 2-(2-methoxyethoxy)ethanol

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