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Ligand · URD

URD · 1-((2R,3R,4S,5R)-tetrahydro-3,4-dihydroxy-5-(hydroxymethyl)furan-2-yl)pyridine-2,4(1H,3H)-dione

URD, 1-((2R,3R,4S,5R)-tetrahydro-3,4-dihydroxy-5-(hydroxymethyl)furan-2-yl)pyridine-2,4(1H,3H)-dione (C10 H13 N O6, 243.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
URD
Formula
C10 H13 N O6
Class
ligand
Structures
2
PDB entries
1

Binding sites

URD in 2 structures; the first of them:

  • 1ZAB · Crystal Structure of Mouse Cytidine Deaminase Complexed with 3-Deazauridine · URD A1001 · binds SER34, PHE36, VAL38, ASN54, GLU56, VAL64, CYS65, ALA66 and 12 more
  • 1ZAB · Crystal structure of mouse cytidine deaminase complexed with 3-deazauridine · URD A1001 · binds SER34, PHE36, VAL38, ASN54, GLU56, VAL64, CYS65, ALA66 and 12 more

Residues it binds most

CYS 8, ALA 8, GLU 8, ILE 8, PHE 8, PRO 8, SER 8, VAL 8, ASN 8, LEU 8 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • SO4 · Sulfate ion

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