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Ligand · UPP

UPP · Phenyl-uridine-5'-diphosphate

UPP, Phenyl-uridine-5'-diphosphate (C15 H18 N2 O12 P2, 480.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
UPP
Formula
C15 H18 N2 O12 P2
Class
ligand
Structures
4
PDB entries
2

Binding sites

UPP in 4 structures; the first of them:

  • 2UDP · Udp-galactose 4-epimerase complexed with udp-phenol · UPP A341 · binds LYS84, VAL86, TYR149, PHE178, ASN179, ASN198, ASN199, LEU200 and 12 more
  • 3BXO · Crystal Structure of Streptomyces venezuelae DesVI · UPP A239 · binds TYR14, ARG17, PHE106, SER107, TYR111, TRP140, TRP141, THR145 and 11 more
  • 2UDP · Udp-galactose 4-epimerase complexed with udp-phenol · UPP A341 · binds LYS84, VAL86, TYR149, PHE178, ASN179, ASN198, ASN199, LEU200 and 12 more
  • 3BXO · Crystal structure of streptomyces venezuelae desvi · UPP A239 · binds TYR14, ARG17, PHE106, SER107, TYR111, TRP140, TRP141, THR145 and 11 more

Residues it binds most

TYR 8, ARG 8, PHE 8, SER 4, ASN 4, TRP 4, ALA 8, ILE 8, LEU 4, THR 4 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • NAD · Nicotinamide-adenine-dinucleotide
  • SAM · S-adenosylmethionine
  • NA · Sodium ion

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