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Ligand · UPL

UPL · Unknown branched fragment of phospholipid

UPL, Unknown branched fragment of phospholipid (C34 H70, 478.9 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
UPL
Formula
C34 H70
Class
ligand
Structures
6
PDB entries
3

Binding sites

UPL in 6 structures; the first of them:

  • 6H53 · Crystal structure of Mycobacterium tuberculosis phosphatidylinositol phosphate synthase… · UPL A302 · binds TRP62, GLY164, VAL165, PHE168
  • 6HJN · Structure of Influenza Hemagglutinin ectodomain (A/duck/Alberta/35/76) · UPL B201 · binds ASP19, TRP21, THR49
  • 6HJP · Structure of Influenza Hemagglutinin ectodomain (A/duck/Alberta/35/76) in complex with… · UPL B201 · binds ILE18, TRP21, THR49
  • 6H53 · Crystal structure of mycobacterium tuberculosis phosphatidylinositol phosphate synthase… · UPL A302 · binds TRP62, GLY164, VAL165, PHE168
  • 6HJN · Structure of influenza hemagglutinin ectodomain (A/DUCK/ALBERTA/35/76) · UPL B201 · binds ASP19, TRP21, THR49
  • 6HJP · Structure of influenza hemagglutinin ectodomain (A/DUCK/ALBERTA/35/76) in complex with… · UPL B201 · binds ILE18, TRP21, THR49

Residues it binds most

ILE 12, THR 14, TRP 18, ASP 8, LEU 4, CYS 4, PHE 4, PRO 4, VAL 4, ALA 2 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • FUC · alpha-L-fucopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • SO4 · Sulfate ion

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