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Ligand · UDM

UDM · Uridine-diphosphate-methylene-N-acetyl-glucosamine

UDM, Uridine-diphosphate-methylene-N-acetyl-glucosamine (C18 H29 N3 O16 P2, 605.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
UDM
Formula
C18 H29 N3 O16 P2
Class
ligand
Structures
4
PDB entries
2

Binding sites

UDM in 4 structures; the first of them:

  • 2APC · Crystal Structure of N-Acetylglucosaminyltransferase I in Complex with UDP-GlcNAc… · UDM A449 · binds ILE113, ALA114, CYS115, ARG117, ASP144, CYS145, TYR184, LYS186 and 14 more
  • 2JLB · Xanthomonas campestris putative OGT (XCC0866), complex with UDP- GlcNAc phosphonate… · UDM A1569 · binds PHE165, PRO219, THR220, LEU222, LEU223, ARG290, LEU313, ALA314 and 17 more
  • 2APC · Crystal structure of N-acetylglucosaminyltransferase I in complex with udp-glcnac… · UDM A449 · binds ILE113, ALA114, CYS115, ARG117, ASP144, CYS145, TYR184, LYS186 and 14 more
  • 2JLB · Xanthomonas campestris putative ogt (XCC0866), complex with udp-glcnac phosphonate… · UDM A1569 · binds PHE165, PRO219, THR220, LEU222, LEU223, ARG290, LEU313, ALA314 and 17 more

Residues it binds most

LEU 6, ASP 6, PRO 4, THR 4, TYR 6, HIS 6, LYS 6, ASN 4, ALA 6, ARG 6 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • CL · Chloride ion
  • GOL · Glycerol

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