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Ligand · TRV

TRV · 6-O-octanoyl-beta-D-fructofuranose

TRV, 6-O-octanoyl-beta-D-fructofuranose (C14 H26 O7, 306.4 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
TRV
Formula
C14 H26 O7
Class
sugar
Structures
6
PDB entries
3

Binding sites

TRV in 6 structures; the first of them:

  • 1PYY · Double mutant PBP2x T338A/M339F from Streptococcus pneumoniae strain R6 at 2.4 A… · TRV B2 · binds THR370, ILE371, ARG372, TRP374, ASP375, VAL376, GLY379, GLN447 and 5 more
  • 3V8V · Crystal structure of bifunctional methyltransferase YcbY (RlmLK) from Escherichia coli… · TRV C2 · binds LEU218, HIS219, ARG220, GLY221, GLN244, LEU574, GLU575, GLU578 and 6 more
  • 3V97 · Crystal structure of bifunctional methyltransferase YcbY (RlmLK) from Escherichia coli… · TRV C2 · binds LEU218, HIS219, ARG220, GLY221, GLN244, LEU574, GLU575, GLU578 and 6 more
  • 1PYY · Double mutant PBP2X T338A/M339F from streptococcus pneumoniae strain R6 at 2.4 a… · TRV B2 · binds THR370, ILE371, ARG372, TRP374, ASP375, VAL376, GLY379, GLN447 and 5 more
  • 3V8V · Crystal structure of bifunctional methyltransferase ycby (rlmlk) from escherichia COLI… · TRV C2 · binds LEU218, HIS219, ARG220, GLY221, GLN244, LEU574, GLU575, GLU578 and 6 more
  • 3V97 · Crystal structure of bifunctional methyltransferase ycby (rlmlk) from escherichia COLI… · TRV C2 · binds LEU218, HIS219, ARG220, GLY221, GLN244, LEU574, GLU575, GLU578 and 6 more

Residues it binds most

ARG 10, LEU 8, GLN 10, GLY 10, GLU 8, THR 10, HIS 8, TYR 2, ASP 2, ILE 2 (residue and the binding sites it lines).

Found with

  • GLC · alpha-D-glucopyranose
  • SAH · S-adenosyl-L-homocysteine
  • SAM · S-adenosylmethionine
  • SO4 · Sulfate ion
  • GOL · Glycerol
  • MPD · (4S)-2-methyl-2,4-pentanediol

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